Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., type II secretion system protein E from Pseudomonas fluorescens FW300-N2E3

 Score =  302 bits (773), Expect = 3e-86
 Identities = 176/488 (36%), Positives = 280/488 (57%), Gaps = 22/488 (4%)

Query: 84  RYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLY--GR 141
           R+  L +A   + + +A + P +   E +      L ++  +A+   +Q      +   +
Sbjct: 109 RHKILAVAIDRDAVTVASAQPYVRSWEADLTHVLQLPIKRVVANPADIQRFSVEFFRLAK 168

Query: 142 SIQGAANQGKEISQ----DELANLVKVSDDELQSIEDLSQDDSPVSRFINQVLLDAVRKG 197
           S+ GA N  ++++     ++L NL   SD E  +      +D+ +   ++ +   A ++ 
Sbjct: 169 SVSGATNADQQMNTLGNFEQLLNL-GASDQEPDA------NDAHIVNIVDWLFQYAFQQR 221

Query: 198 ASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRI 257
           ASDIH EP   Q  +R R DG+L    Q    ++  + +R+K L ++++AE+R PQDGR+
Sbjct: 222 ASDIHIEPRREQGTVRFRIDGVLHNVYQFPPQVTMAIVSRLKSLGRMNVAEKRKPQDGRV 281

Query: 258 KLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQ 317
           K +      +++R+STLPT +GEK+V+R+ D      D D+LG++    + + +  ++P 
Sbjct: 282 KTKTPDGGEVELRLSTLPTAFGEKMVMRIFDPEVLLKDFDQLGFSADDLRRWQDMTRQPN 341

Query: 318 GMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAE 377
           G+IL+TGPTGSGKT +LYT L+ L T ++N+ T EDP+E+     NQ+QVQ  I   FA 
Sbjct: 342 GIILVTGPTGSGKTSTLYTTLKKLATPEVNLCTIEDPIEMVEPAFNQMQVQHNIDLTFAS 401

Query: 378 ALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEP 437
            +R+ +RQDPD++M+GEIRDLETAE+A++AA TGHLVLSTLHTN A   + RL  +GV  
Sbjct: 402 GVRALMRQDPDIIMIGEIRDLETAEMAIQAALTGHLVLSTLHTNDAPSAISRLLELGVPH 461

Query: 438 FNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQS--QFAFQPNEILYEAN---AAGCNE 492
           + + ++L  ++AQRL R LC HCK    P  L +   Q   +P +     N   A GC E
Sbjct: 462 YLIKATLLGVMAQRLVRTLCPHCK---APLTLGEDDWQTLTRPWQAPLPGNAQRAIGCLE 518

Query: 493 CTG-GYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGIT 551
           C   GY GR G+YE+M     +   I     +  + R A   GM++L+ SG +K+  G+T
Sbjct: 519 CRDTGYRGRAGVYEIMQMTDSVKALINPDTDLLAVRRQAFKEGMRSLRLSGAQKVAAGLT 578

Query: 552 SFAELQRV 559
           +  E+ RV
Sbjct: 579 TIEEVLRV 586