Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., ATPase from Synechococcus elongatus PCC 7942

 Score =  338 bits (866), Expect = 5e-97
 Identities = 231/603 (38%), Positives = 337/603 (55%), Gaps = 54/603 (8%)

Query: 9   LRQAELISATQEQAVVTQVSASGTSVPEALLELS----------IFHAQELTEQLSHIFG 58
           L QA  +   Q Q  + +   SG S+P+ +  L+           +  Q+L E L  + G
Sbjct: 25  LVQAGFVDPEQLQTALVESRRSGQSLPQVISALTGQSLPPELMQQYRRQQLFE-LKILHG 83

Query: 59  LPETDLSRYDYAN-----LCQQLGLRELITRYDALPIAKQGN--LLLLAVSDPTLLQAEE 111
           +   +  +  Y+      L   L   E   R+  +P+ +       ++A+ DP  L A +
Sbjct: 84  VESLNPDQGQYSEEVIHELIADLVPIETCRRHQLVPLERHEAPPRAVVAMVDPNNLDALD 143

Query: 112 EF------RFATGLQVELALADHRALQAAIRRLYGRSIQGAANQGKEISQ--DELANLVK 163
           E       R  T  ++ + L D+  L A    L  +  +  A Q K++    +ELANL  
Sbjct: 144 ELNRLLRPRGYTLQRLVITLEDYERLIAGY--LDQQLERQQAMQAKQLGDFSEELANLDN 201

Query: 164 VSDDELQ-SIEDLSQ-----DDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCD 217
           +   E+    EDL++     DD+P+    N++LL A+ +GASDIH EP E+  R+RLR D
Sbjct: 202 LELTEISVQEEDLAKALQEADDAPIVSLANKILLKALTEGASDIHVEPQEDGLRVRLRRD 261

Query: 218 GIL-VETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPT 276
           G+L  E       +   L +R+KI++ LDIAERR+PQDGRI+ R+ +   ID RV++LP+
Sbjct: 262 GVLHQEFGTLPKKIQPALISRLKIMANLDIAERRVPQDGRIR-RMFQGRKIDFRVNSLPS 320

Query: 277 LWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILMTGPTGSGKTVSLYT 336
            +GEKI +RLLD+SA  L +D+L  + +   L  +   RP G+IL+TGPTGSGK+ SLY+
Sbjct: 321 HFGEKICMRLLDNSATQLGLDQLITDEEALALVRDMGSRPYGLILVTGPTGSGKSTSLYS 380

Query: 337 GLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIR 396
            L   N   INI+TAEDP+E  L G+ QVQV  + G  FA  LR+F+RQDPDV++VGE R
Sbjct: 381 LLAERNDPAININTAEDPIEYTLPGLTQVQVLREKGMNFASILRAFMRQDPDVILVGETR 440

Query: 397 DLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRL 456
           DLETA  A++AA TGHLVL+TLH N A   + RL+ MGVEP+ ++ SL  +++QRL RR+
Sbjct: 441 DLETARTAIEAALTGHLVLTTLHANDAPSAIARLSEMGVEPYLVSGSLIGVVSQRLMRRV 500

Query: 457 CKHCKIAVRP----------SALLQSQFAFQ-----PNEILYEANAAG--CNECTG-GYS 498
           C  C++   P          SA  +    F       ++ L +A + G  C  C G GY 
Sbjct: 501 CPDCRVPYTPNPEELGRYGLSASQELDVTFYKAKTLTSDSLAQARSQGQVCRTCRGTGYK 560

Query: 499 GRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQR 558
           GRVG+YEVM  N  L  AI Q     +++ +A   GM+TL    LE +R+G T+F E+ R
Sbjct: 561 GRVGVYEVMRVNEVLQVAINQGLPTERLKEIAVEQGMKTLLSYSLELVRQGYTTFEEVDR 620

Query: 559 VLY 561
           V +
Sbjct: 621 VTF 623