Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., MSHA biogenesis protein MshE (RefSeq) from Shewanella amazonensis SB2B

 Score =  325 bits (833), Expect = 3e-93
 Identities = 205/563 (36%), Positives = 312/563 (55%), Gaps = 19/563 (3%)

Query: 8   ILRQAELISATQEQAVVTQVSASGTSVPEALLELSIFHAQELTEQLSHIFGLPETDLSRY 67
           +L   ++I   Q  A + Q  ++G  +   L+++      +L + LS    +P  D+SR 
Sbjct: 12  LLVSEQIIGEDQLTAALAQQKSTGRKLGRTLIDMGYIAEDQLLKFLSQQLNIPYLDISRR 71

Query: 68  DYANLCQQLGLRELITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATG-LQVELALA 126
                   L       RY AL I  +G+ +++A+SDP  LQA +         +++L +A
Sbjct: 72  PVPPAVVNLLPEVQARRYRALVIEDKGDAVVVAMSDPADLQALDNLEVLLAPKRLDLVVA 131

Query: 127 DHRALQAAIRRLYGRSIQGAANQGK---EISQDELANLVKVSDDELQSIEDLSQDDSPVS 183
               L  A   LY R+ Q A   G+   E + DE  +L  ++  +       S  ++ V 
Sbjct: 132 PEAQLMQAFDNLYRRTEQIAQMAGQLEEEYAADEAFDLAALTAGD-------SDSETTVV 184

Query: 184 RFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSK 243
           + +  +  DAV+  ASDIH EP +   RIR R DG L ET      ++  L  R+K+++ 
Sbjct: 185 KLLQSIFEDAVQMRASDIHIEPGDKSLRIRQRVDGHLQETILNEVTIAAALVLRLKLMAG 244

Query: 244 LDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNP 303
           LDI+E+RLPQDGR  + + +   ID+R+ST+P   GE +V+RLLD SA  L +++ G   
Sbjct: 245 LDISEKRLPQDGRFHMEV-KGHKIDVRISTMPIYHGESVVMRLLDQSAGLLTLNETGMPD 303

Query: 304 QQKQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGIN 363
              Q     +KRP GM+L+TGPTGSGKT +LY  L  LNT+   I T EDPVE  L  IN
Sbjct: 304 AILQRVRKQIKRPHGMLLVTGPTGSGKTTTLYGILSELNTADRKIITVEDPVEYQLPRIN 363

Query: 364 QVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSA 423
           QVQV  KIG  F+  LR+ LRQDPD++MVGE+RD ET EI ++ A TGH VLSTLHTN A
Sbjct: 364 QVQVNHKIGLNFSNVLRTTLRQDPDIIMVGEMRDHETVEIGLRGALTGHFVLSTLHTNDA 423

Query: 424 AETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNEILY 483
             + +RL +MG   + +AS+L +IIAQRL RR+C++C +  + ++  ++        + +
Sbjct: 424 VTSALRLLDMGAASYLVASALRVIIAQRLVRRVCQNCAVDYQLTSQDKAWLTSVSKGVDF 483

Query: 484 E----ANAAGCNECTG-GYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKAN-GMQT 537
                    GC  C+G GY GR+GI+E++  +  + +A M+  +     + A A+     
Sbjct: 484 SQARFRMGTGCQSCSGTGYRGRIGIFELLELDEAMVDA-MRTGNPQAFAQAAYASPNFTP 542

Query: 538 LQESGLEKLREGITSFAELQRVL 560
           L  S L  L++G+T+  E+ R++
Sbjct: 543 LLISALNYLKQGMTTIEEVARLV 565