Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., type IV pilus biogenesis protein PilB (RefSeq) from Shewanella amazonensis SB2B

 Score =  548 bits (1411), Expect = e-160
 Identities = 292/561 (52%), Positives = 386/561 (68%), Gaps = 23/561 (4%)

Query: 14  LISATQEQAVVTQVSASGTSVPEALLELSIFHAQELTEQLSHIFGLPETDLSRYDYANLC 73
           L++  Q    V+Q   +  S+   L+   +  A+E+ E     +G P  DL+ +D +++ 
Sbjct: 19  LLTEEQLSEAVSQSRKNRHSLVTTLVISKLISAREIAELCYEEYGTPLLDLAEFDVSSIP 78

Query: 74  QQLGLRELITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQA 133
           +    ++LI ++  LP+ K+GN L +  SDPT + A E+F+F+ GL  E  L +   L  
Sbjct: 79  EDFLNKKLIEKHRCLPLFKRGNRLYIGTSDPTNIPALEDFQFSAGLHAEAILVEDDKLAK 138

Query: 134 AIRRLYGRSIQGAANQGKEISQDELANLVKVSDDELQSIEDLSQDDSPVSRFINQVLLDA 193
           A+ ++    I      G  + ++ LA +     D+    ++   DD+P+  +IN++L DA
Sbjct: 139 ALEKILEEDISALDLGG--LDEEALAGIEVTDTDKRPENDNEGADDAPIVIYINKILTDA 196

Query: 194 VRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQ 253
           +R+GASD+HFEPYE +YRIR R DGIL E  +P  +LS R++AR+K++SKLDIAERRLPQ
Sbjct: 197 IRRGASDLHFEPYEKRYRIRFRIDGILHEVSEPPINLSGRISARLKVMSKLDIAERRLPQ 256

Query: 254 DGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNAL 313
           DGRIK++LSR  +ID RVSTLPTLWGEKIV+R+LDSS+A L I+KLGY P QKQLYL+ L
Sbjct: 257 DGRIKMKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQKQLYLDNL 316

Query: 314 KRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGF 373
            +PQGMIL+TGPTGSGKTVSLYTGL ILNT + NISTAEDPVEINL G+NQV +  K G 
Sbjct: 317 AKPQGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINNKAGL 376

Query: 374 GFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANM 433
            FA ALRSFLRQDPDVVMVGEIRDLETAEIA+KAAQTGHLVLSTLHTNSAAET+ RL NM
Sbjct: 377 TFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLLNM 436

Query: 434 GVEPFNLASSLSLIIAQRLARRLCKHCK------------IAVRPSALLQSQFAFQPNEI 481
           GV  +N+ASS++LIIAQRLARRLC  CK            +    + + +   AF+P   
Sbjct: 437 GVPGYNIASSVNLIIAQRLARRLCPECKQPEEIPNHELERLGFNQAQIAEGFTAFKP--- 493

Query: 482 LYEANAAGCNECTGGYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQES 541
                  GC+ C+GGY GRVGIYEVM  + E+A  IM+  +  +I R+AK+ G++ L+ S
Sbjct: 494 ------CGCDLCSGGYKGRVGIYEVMPMSDEIARVIMEGGNSLEIARMAKSQGVRDLRLS 547

Query: 542 GLEKLREGITSFAELQRVLYF 562
           GL K+ +G+TS AE+ RV  F
Sbjct: 548 GLLKVIQGVTSIAEVNRVTSF 568