Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., general secretion pathway protein E (RefSeq) from Shewanella amazonensis SB2B

 Score =  348 bits (894), Expect = e-100
 Identities = 212/525 (40%), Positives = 313/525 (59%), Gaps = 15/525 (2%)

Query: 41  LSIFHAQELTEQLSHIFGLP-ETDLSRYDYANLCQQLGLRELITRYDALPIAKQGNLLLL 99
           +S  +  E+ E+LS   G+  ET +     +N  ++L       R+  +    +  +L L
Sbjct: 1   MSDINQGEVLERLSDELGVEAETQVDEAFRSNSRERLPFA-FAHRFGLVLAKDEQGVLGL 59

Query: 100 AVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSIQGAANQGKEISQD-EL 158
             +D T L A  E R   G  V L   +  A +A + + Y  +   A    ++I  + +L
Sbjct: 60  YYTDKTPLAALLEVRRYAGEAVPLQRLEASAFEARLTQAYQANSSEAQQLMEDIGNEMDL 119

Query: 159 ANLVKVSDDELQSIEDLSQ--DDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRC 216
             L     +EL   EDL +  DD+P+ R IN +L +A+++ ASDIH E YE Q  +R R 
Sbjct: 120 FTLA----EELPQTEDLLEGDDDAPIIRLINALLSEAIKEEASDIHIETYEKQLVVRFRV 175

Query: 217 DGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPT 276
           DG+L E  +P   LS  L +RIK++++LDIAE+R+PQDGRI LR+    A+D+RVST+P+
Sbjct: 176 DGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIG-GRAVDVRVSTMPS 234

Query: 277 LWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILMTGPTGSGKTVSLYT 336
             GE++VLRLLD +A NLD+ +LG     ++ +   +++P G++L+TGPTGSGK+ +LY 
Sbjct: 235 SHGERVVLRLLDKNAGNLDLAQLGMTETIREQFDELIRKPHGILLVTGPTGSGKSTTLYA 294

Query: 337 GLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIR 396
           GL  +N+   NI T EDP+E  L GI Q QV  K+   FA  LR+ LRQDPDVVM+GEIR
Sbjct: 295 GLTEINSRDTNILTVEDPIEYELEGIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIR 354

Query: 397 DLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRL 456
           DLETA+IAV+A+ TGHLV+STLHTN+A+  + RL +MGVEPF ++SSL  ++AQRL R L
Sbjct: 355 DLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSSSLLGVLAQRLVRTL 414

Query: 457 CKHCKIAVRPSALLQSQFAFQPNE-ILYEANAAGCNEC-TGGYSGRVGIYEVMAFNTELA 514
           C  CK    P    +        + ++Y   A GC  C   GY GR GI+E++  +  + 
Sbjct: 415 CPSCKAPHVPDERERELLGIGGGDAVIY--RATGCKACGHNGYRGRTGIHELLLVDDTVR 472

Query: 515 EAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRV 559
           E I        IE+  +   + +++  G++K+  GIT+  E+ RV
Sbjct: 473 ELIHGGRGELAIEKYIR-QSVPSIRHDGMQKVLAGITTLEEVLRV 516