Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., type II secretion system protein E (NCBI) from Rhodospirillum rubrum S1H

 Score =  299 bits (766), Expect = 2e-85
 Identities = 202/559 (36%), Positives = 299/559 (53%), Gaps = 31/559 (5%)

Query: 14  LISATQEQAVVTQVSASGTSVPEALLELSIFHAQELTEQLSHIFGLPETDLSRYDYANLC 73
           LIS  Q +    +   SG  + + L++L       L E L+   G    D +    + L 
Sbjct: 142 LISRDQMRVAHIEQKRSGAPLGQVLVDLGFITDGVLAEVLAQSSGHDRFDAA----STLA 197

Query: 74  QQLGLREL----ITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFR--FATGLQVELALAD 127
               L  L      R    P+  +G+LL LA+ DP  + A +E R  +   +++E  ++ 
Sbjct: 198 DPAALAPLPEREARRLRVFPVGLRGSLLRLAMVDPLDVVAIDEVRRHYGRDVRIEPVVSS 257

Query: 128 HRALQAAIRRLYGR--SIQGAANQGKEISQDELANLVKVSDDELQSIEDLSQDDSPVSRF 185
              +  AI R YG   ++ G           EL  L     D  +S+ D   D  PV R 
Sbjct: 258 EAEIAQAIDRSYGHVLALDGVLR--------ELETLGAAGADP-ESLRDT--DSHPVVRL 306

Query: 186 INQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLD 245
           +N +LLDAV++ ASD+HFEP     R+RLR DG L +T          +A R+KIL+ ++
Sbjct: 307 VNALLLDAVKRRASDLHFEPQGAFLRVRLRIDGTLSQTLIFHKQYWPAVAQRLKILAGMN 366

Query: 246 IAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQ 305
           IA+R  PQDGR  + ++    ID R S +PT+ GE +VLR+LD SA  L +++L      
Sbjct: 367 IADRLGPQDGRFSMAIAH-RKIDFRASVIPTVHGENMVLRVLDRSATPLKLEQLALAHGT 425

Query: 306 KQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQV 365
                  ++RP+G++L+TGPTGSGKT +LY  +  ++  +I I T EDPVE +L  + Q 
Sbjct: 426 LDPLELLVRRPEGLLLVTGPTGSGKTTTLYALMDHISGPEITIVTLEDPVEYDLPLLRQT 485

Query: 366 QVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAE 425
           QV+     GFA+ +R+ LRQDPDV++VGEIRD +TA +A++AA TGH V +TLH N A  
Sbjct: 486 QVREGARLGFADGIRALLRQDPDVMLVGEIRDADTAAMALRAAMTGHQVYATLHANDAPS 545

Query: 426 TVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSAL---LQSQFAFQPNEIL 482
            + RL ++G+ P  LA SL  ++AQRL RRLC HC+ + R S +   +    A  P EI 
Sbjct: 546 ALPRLMDLGLRPGLLAGSLIGVLAQRLVRRLCPHCRQSYRASPVECKILGLDATDPPEIF 605

Query: 483 YEANAAGCNEC-TGGYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQES 541
               A GC  C   GY GRV I E+++ + E+ + I   A + +I  LA   G + + + 
Sbjct: 606 ---RARGCEACGQTGYHGRVPISELLSISPEIDDLIASAAPLAEIRALATRQGYRPMLDD 662

Query: 542 GLEKLREGITSFAELQRVL 560
           G   + EG+   A L R +
Sbjct: 663 GARLVCEGVIDVAALMRAI 681