Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., general secretory pathway protein E (RefSeq) from Shewanella loihica PV-4

 Score =  345 bits (886), Expect = 2e-99
 Identities = 195/459 (42%), Positives = 286/459 (62%), Gaps = 10/459 (2%)

Query: 105 TLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSIQGAANQGKEISQD-ELANLVK 163
           T + A  E R  TG ++ LA  +    +A + ++Y  +   A    ++I  + +L  L  
Sbjct: 67  TPIDAMLEVRRYTGKELALAQLEPSVFEAKLTQVYQANSSEAQQLMEDIGNEMDLFTLA- 125

Query: 164 VSDDELQSIEDLSQ--DDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILV 221
              +EL   EDL +  DD+P+ + IN +L +A+++ ASDIH E YE Q  +R R DG+L 
Sbjct: 126 ---EELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDIHIETYEKQLVVRFRVDGVLK 182

Query: 222 ETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEK 281
           E  +P   LS  L +RIK++++LDIAE+R+PQDGRI LR++   A+D+RVST+P+  GE+
Sbjct: 183 EVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIA-GRAVDVRVSTMPSSHGER 241

Query: 282 IVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRIL 341
           +VLRLLD +A NLD+ +LG   + +  +   +++P G+IL+TGPTGSGK+ +LY GL  +
Sbjct: 242 VVLRLLDKNAGNLDLKQLGMTDEIRHQFDELIRKPHGIILVTGPTGSGKSTTLYAGLTEI 301

Query: 342 NTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETA 401
           N    NI T EDP+E  L GI Q QV  K+   FA  LR+ LRQDPDVVM+GEIRDLETA
Sbjct: 302 NAIDTNILTVEDPIEYELPGIGQTQVNTKVDMTFARGLRAILRQDPDVVMIGEIRDLETA 361

Query: 402 EIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCK 461
           +IAV+A+ TGHLV+STLHTN+A+  + RL +MGVEPF ++SSL  ++AQRL R LC  CK
Sbjct: 362 QIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSSSLLGVLAQRLIRTLCPSCK 421

Query: 462 IAVRPSALLQSQFAFQPNEILYEANAAGCNEC-TGGYSGRVGIYEVMAFNTELAEAIMQR 520
               P    +       ++      A GC+ C   GY GR GI+E++  +  + E I   
Sbjct: 422 TEHTPDLRERELLGISEDDPRTIYRATGCSACGHNGYRGRTGIHELLLVDDYVRELIHTG 481

Query: 521 ASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRV 559
                IE+  +   + +++  G+ K+  G+T+  E+ RV
Sbjct: 482 RGELAIEKHIRKT-VPSIRHDGMIKVLAGVTTLEEVLRV 519