Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella loihica PV-4

 Score =  537 bits (1383), Expect = e-157
 Identities = 292/553 (52%), Positives = 378/553 (68%), Gaps = 6/553 (1%)

Query: 14  LISATQEQAVVTQVSASGTSVPEALLELSIFHAQELTEQLSHIFGLPETDLSRYDYANLC 73
           L+S  Q    V     +   +   L+   +  A+E+ E     +G P  DL+ +D +++ 
Sbjct: 19  LLSEEQLSEAVDLSRKNKQPLVSTLIATKVLSAREVAELCYEEYGTPLLDLNEFDISSIP 78

Query: 74  QQLGLRELITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQA 133
           +    ++LI ++  LP+ K+GN L +  SDPT + A E+F+F+ GL  E  L +   L  
Sbjct: 79  EAFLNKKLIEKHKCLPLFKRGNRLYIGTSDPTNIAALEDFQFSAGLHAEAILVEDDKLTV 138

Query: 134 AIRRLYGRSIQGAANQGKEISQDELANLVKVSDDELQSIEDL-SQDDSPVSRFINQVLLD 192
           A+ ++    I      G  I +D L+ +     D+ Q  +   + DD+P+  +IN++L D
Sbjct: 139 ALEKVLEEDISALDLDG--IDEDSLSGIEITDTDKRQEEQQGDASDDAPIVIYINKILTD 196

Query: 193 AVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLP 252
           A+RKGASD+HFEPYE +YRIR R DGIL E  +P  +LS R++AR+K++SKLDIAERR+P
Sbjct: 197 AIRKGASDLHFEPYEKRYRIRFRIDGILHEVSEPPVNLSGRISARLKVMSKLDIAERRVP 256

Query: 253 QDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNA 312
           QDGRIK++LSR  +ID RVSTLPT+WGEKIV+R+LDSS+A L I+KLGY   Q++LY   
Sbjct: 257 QDGRIKMKLSRTKSIDFRVSTLPTIWGEKIVMRILDSSSAQLGIEKLGYENDQRKLYEEM 316

Query: 313 LKRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIG 372
           L +PQGMIL+TGPTGSGKTVSLYTGL ILNT + NISTAEDPVEINL G+NQV +  K G
Sbjct: 317 LAKPQGMILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINLKAG 376

Query: 373 FGFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLAN 432
             FA ALRSFLRQDPDVVMVGEIRDLETAEIA+KAAQTGHLVLSTLHTNSAAET+ RL N
Sbjct: 377 LTFASALRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLIN 436

Query: 433 MGVEPFNLASSLSLIIAQRLARRLCKHCK--IAVRPSALLQSQFA-FQPNEILYEANAAG 489
           MGV  +N+ASS++LIIAQRLARRLC  C+    V    LL+  F   Q +E        G
Sbjct: 437 MGVPGYNIASSVNLIIAQRLARRLCTECRQPEEVPEHELLKLGFTQAQIDEGFTVYKPVG 496

Query: 490 CNECTGGYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREG 549
           C+ C+GGY GRVGIYEVM  + E+A  IM+  +  QI   AK  GM+ L+ESGL K+  G
Sbjct: 497 CDLCSGGYKGRVGIYEVMKMSDEIARTIMEGGNSLQIATQAKEQGMRDLRESGLRKVIAG 556

Query: 550 ITSFAELQRVLYF 562
           +TS AE+ RV  F
Sbjct: 557 VTSIAEINRVTSF 569