Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., type II secretion system protein E (RefSeq) from Shewanella loihica PV-4

 Score =  331 bits (848), Expect = 6e-95
 Identities = 207/565 (36%), Positives = 311/565 (55%), Gaps = 24/565 (4%)

Query: 8   ILRQAELISATQEQAVVTQVSASGTSVPEALLELSIFHAQELTEQLSHIFGLPETDLSRY 67
           +L Q  +IS  Q    + +   +G  +   L++LS    ++L + LS    +P  D+SR 
Sbjct: 12  LLVQEAIISEAQLGQALAEQRNTGKKLGRTLIDLSCITEEQLLKFLSQQLNIPFLDISRR 71

Query: 68  ----DYANLCQQLGLRELITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQ-VE 122
                  NL  ++  R    RY AL +   G+ +L+A+SDP  LQA +        + ++
Sbjct: 72  AIPPQVVNLLPEVQAR----RYRALAVEDNGDHVLVAMSDPADLQAMDNIEVLLAPKAIK 127

Query: 123 LALADHRALQAAIRRLYGRSIQGAANQGK---EISQDELANLVKVSDDELQSIEDLSQDD 179
           +A+     L  A   LY R+ + A   GK   E + D+  +L  ++D +       S ++
Sbjct: 128 IAVVTETQLLEAFDNLYRRTGEIAQIAGKLEEEYAADDQFDLASLTDAD-------SDNE 180

Query: 180 SPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIK 239
           + V + +  +  DAV+  ASDIH EP +   RIR R DG L E      +++  L  R+K
Sbjct: 181 TTVVKLLQSIFEDAVQMRASDIHIEPGDKVLRIRQRIDGQLQENTLQEVNIASALVLRLK 240

Query: 240 ILSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKL 299
           +++ LDI+E+RLPQDGR  + + +   ID+R+ST+P   GE +V+RLLD SA  L +D+ 
Sbjct: 241 LMAGLDISEKRLPQDGRFHMEI-KGHKIDVRMSTMPIYHGESVVMRLLDQSAGLLTLDET 299

Query: 300 GYNPQQKQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINL 359
           G   +        +KRP GM+L+TGPTGSGKT +LY  L  LNT+   I T EDPVE  L
Sbjct: 300 GMPAEMLARVRRQIKRPHGMLLVTGPTGSGKTTTLYGVLSELNTADRKIITVEDPVEYQL 359

Query: 360 SGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLH 419
             INQVQV  KIG  F+  LR+ LRQDPD++MVGE+RD ET EI ++ A TGH VLSTLH
Sbjct: 360 PRINQVQVNHKIGLDFSNVLRTTLRQDPDIIMVGEMRDQETVEIGLRGALTGHFVLSTLH 419

Query: 420 TNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPN 479
           TN A  + +RL +MG   + +AS+L +IIAQRL RR+C  C      SA   +  +    
Sbjct: 420 TNDAVTSALRLLDMGAASYLVASALRVIIAQRLVRRVCHKCAQPYDASAADHAWLSSISG 479

Query: 480 EILYEAN---AAGCNECTG-GYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGM 535
               +A      GC  C G GY GR+G++E++  + ++ +A+         +   ++   
Sbjct: 480 RDFSQAKFRIGTGCQSCNGSGYRGRIGVFEILELDEKMIDAMRSGNPQAFAQAAYQSPNF 539

Query: 536 QTLQESGLEKLREGITSFAELQRVL 560
             L ES L  L EG+T+  E+ +++
Sbjct: 540 TPLAESALNYLAEGMTTMEEVAKLI 564