Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., general secretion pathway protein E (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  347 bits (891), Expect = e-100
 Identities = 197/459 (42%), Positives = 284/459 (61%), Gaps = 10/459 (2%)

Query: 105 TLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSIQGAANQGKEISQD-ELANLVK 163
           T L A  E R  +G+ + L L +    +  + + Y  +   A    ++I  + +L  L  
Sbjct: 65  TPLAAMLEARRYSGVDLPLVLLEPNKFEVKLTQAYQANSSEAQQLMEDIGNEMDLFTLA- 123

Query: 164 VSDDELQSIEDLSQ--DDSPVSRFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILV 221
              +EL   EDL +  DD+P+ + IN +L +A+++ ASDIH E YE Q  +R R DG+L 
Sbjct: 124 ---EELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASDIHIETYEKQLVVRFRIDGVLK 180

Query: 222 ETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEK 281
           E  +P   LS  L +RIK++++LDIAE+R+PQDGRI LR++   A+D+RVST+P+  GE+
Sbjct: 181 EVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIA-GRAVDVRVSTMPSSHGER 239

Query: 282 IVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRIL 341
           +VLRLLD +A NLD+ +LG     +  +   ++RP G+IL+TGPTGSGK+ +LY GL  +
Sbjct: 240 VVLRLLDKNAGNLDLKQLGMTDSIRAKFDELIRRPHGIILVTGPTGSGKSTTLYAGLTEI 299

Query: 342 NTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETA 401
           N+   NI T EDP+E  L GI Q QV  K    FA  LR+ LRQDPDVVM+GEIRDLETA
Sbjct: 300 NSKDTNILTVEDPIEYELEGIGQTQVNTKADMTFARGLRAILRQDPDVVMIGEIRDLETA 359

Query: 402 EIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCK 461
           +IAV+A+ TGHLV+STLHTN+A+  + RL +MGVEPF ++SSL  ++AQRL R LC  CK
Sbjct: 360 QIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSSSLLGVLAQRLIRTLCPKCK 419

Query: 462 IAVRPSALLQSQFAFQPNEILYEANAAGCNECTG-GYSGRVGIYEVMAFNTELAEAIMQR 520
               P    +       ++  +   A GC  C G GY GR GI+E++  +  + E I   
Sbjct: 420 TEHTPDERERELLGITADDPRHIYRANGCKACGGSGYRGRTGIHELLLVDDNVRELIHGG 479

Query: 521 ASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRV 559
                IE+  +   + +++  G+ K+  GIT+  E+ RV
Sbjct: 480 RGELAIEKYIR-QSVPSIRHDGMSKVLLGITTLEEVLRV 517