Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., type II secretion system protein E (RefSeq) from Shewanella sp. ANA-3

 Score =  340 bits (872), Expect = 9e-98
 Identities = 212/562 (37%), Positives = 318/562 (56%), Gaps = 18/562 (3%)

Query: 8   ILRQAELISATQEQAVVTQVSASGTSVPEALLELSIFHAQELTEQLSHIFGLPETDLSRY 67
           +L Q  +I+  Q Q  + +   +G  +   L+EL      +L + LS    LP  D+S+ 
Sbjct: 12  LLVQESIITEEQLQQALGEQRKTGHKLGRTLIELRSITETQLLQFLSQQLNLPLLDISKR 71

Query: 68  DYANLCQQLGLRELITRYDALPIAKQGNLLLLAVSDPTLLQAEEEFR-FATGLQVELALA 126
                   L       R+ AL +  +G+ +L+A+SDP  LQA +      T  ++ +A+A
Sbjct: 72  PIPAEVVSLIPEVQARRFRALAVEDRGDTVLVAMSDPADLQALDHLENLITPKKLSVAVA 131

Query: 127 DHRALQAAIRRLYGRSIQGAANQGK---EISQDELANLVKVSDDELQSIEDLSQDDSPVS 183
             + L  A   LY R+ Q A   GK   E + D++ +L  ++  +       S +++ V 
Sbjct: 132 PEQQLLQAFDNLYRRTDQIAQIAGKLEEEYAADQMFDLASLTSSD-------SDNETTVV 184

Query: 184 RFINQVLLDAVRKGASDIHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSK 243
           + +  +  DAV+  ASDIH EP E   RIR R DG L ET     +++  L  R+K+++ 
Sbjct: 185 KLLQSIFEDAVQMRASDIHIEPGEKALRIRQRIDGQLHETILNEVNIAAALVLRLKLMAG 244

Query: 244 LDIAERRLPQDGRIKLRLSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNP 303
           LDI+E+RLPQDGR  + + +   ID+R+ST+P   GE +V+RLLD SA  L +++ G  P
Sbjct: 245 LDISEKRLPQDGRFHMEI-KGHKIDVRMSTMPIYHGESVVMRLLDQSAGLLTLNETGMPP 303

Query: 304 QQKQLYLNALKRPQGMILMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGIN 363
                    +KRP GM+L+TGPTGSGKT +LY  L  LNT+   I T EDPVE  L  IN
Sbjct: 304 HILARIRKQIKRPHGMLLVTGPTGSGKTTTLYGILSELNTADRKIITVEDPVEYQLPRIN 363

Query: 364 QVQVQPKIGFGFAEALRSFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSA 423
           QVQV  KIG  F+  LR+ LRQDPD++MVGE+RD ET EI ++ A TGH VLSTLHTN A
Sbjct: 364 QVQVNHKIGLDFSNVLRTTLRQDPDIIMVGEMRDQETVEIGLRGALTGHFVLSTLHTNDA 423

Query: 424 AETVIRLANMGVEPFNLASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNEILY 483
             + +RL +MG   + +AS+L +IIAQRL RR+C +C +  +P+A  ++       +   
Sbjct: 424 VTSALRLLDMGAASYLVASALRVIIAQRLVRRVCHNCGVEYQPTAQEKAWLNSVSRQDFS 483

Query: 484 EAN---AAGCNECTG-GYSGRVGIYEVMAFNTELAEAIMQRASIHQIERLA-KANGMQTL 538
            A      GC  C G GY GR+GI+E++  + ++ +A M+  +     R A ++     L
Sbjct: 484 SAKFRIGTGCQSCNGSGYRGRIGIFEILELDEKMIDA-MRTGNPQDFARAALQSPNFTPL 542

Query: 539 QESGLEKLREGITSFAELQRVL 560
            ES L+ L EG+T+  E+ +++
Sbjct: 543 AESALQYLSEGMTTIEEVAKLV 564