Pairwise Alignments

Query, 562 a.a., type IV-A pilus assembly ATPase PilB from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., type II secretion system protein E (GspE) (RefSeq) from Shewanella sp. ANA-3

 Score =  347 bits (890), Expect = e-100
 Identities = 200/480 (41%), Positives = 291/480 (60%), Gaps = 10/480 (2%)

Query: 84  RYDALPIAKQGNLLLLAVSDPTLLQAEEEFRFATGLQVELALADHRALQAAIRRLYGRSI 143
           R++ +        L L  +  T L A  E R  +G  + L L +    +A + + Y  + 
Sbjct: 44  RHEVILAYGDDGALNLFYTAKTPLAAMLEARRYSGADLPLVLLEPGKFEAKLTQAYQANS 103

Query: 144 QGAANQGKEISQD-ELANLVKVSDDELQSIEDLSQ--DDSPVSRFINQVLLDAVRKGASD 200
             A    ++I  + +L  L     +EL   EDL +  DD+P+ + IN +L +A+++ ASD
Sbjct: 104 SEAQQLMEDIGNEMDLFTLA----EELPQTEDLLEGDDDAPIIKLINALLSEAIKEEASD 159

Query: 201 IHFEPYENQYRIRLRCDGILVETQQPASHLSRRLAARIKILSKLDIAERRLPQDGRIKLR 260
           IH E YE Q  +R R DG+L E  +P   LS  L +RIK++++LDIAE+R+PQDGRI LR
Sbjct: 160 IHIETYEKQLVVRFRIDGVLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLR 219

Query: 261 LSRDTAIDMRVSTLPTLWGEKIVLRLLDSSAANLDIDKLGYNPQQKQLYLNALKRPQGMI 320
           ++   A+D+RVST+P+  GE++VLRLLD +A NLD+ +LG     +  +   ++RP G+I
Sbjct: 220 IA-GRAVDVRVSTMPSSHGERVVLRLLDKNAGNLDLKQLGMTDSIRAQFDEIIRRPHGII 278

Query: 321 LMTGPTGSGKTVSLYTGLRILNTSQINISTAEDPVEINLSGINQVQVQPKIGFGFAEALR 380
           L+TGPTGSGK+ +LY GL  +N+   NI T EDP+E  L GI Q QV  K    FA  LR
Sbjct: 279 LVTGPTGSGKSTTLYAGLTEINSKDTNILTVEDPIEYELEGIGQTQVNTKADMTFARGLR 338

Query: 381 SFLRQDPDVVMVGEIRDLETAEIAVKAAQTGHLVLSTLHTNSAAETVIRLANMGVEPFNL 440
           + LRQDPDVVM+GEIRDLETA+IAV+A+ TGHLV+STLHTN+A+  + RL +MGVEPF +
Sbjct: 339 AILRQDPDVVMIGEIRDLETAQIAVQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLV 398

Query: 441 ASSLSLIIAQRLARRLCKHCKIAVRPSALLQSQFAFQPNEILYEANAAGCNEC-TGGYSG 499
           +SSL  ++AQRL R LC  CK    P    +       ++  +   A GC  C + GY G
Sbjct: 399 SSSLLGVLAQRLIRTLCPKCKTEHVPDERERELLGMAADDHRHIYRANGCKACGSSGYRG 458

Query: 500 RVGIYEVMAFNTELAEAIMQRASIHQIERLAKANGMQTLQESGLEKLREGITSFAELQRV 559
           R GI+E++  +  + E I        IE+  +   + +++  G+ K+  GIT+  E+ RV
Sbjct: 459 RTGIHELLLVDDNVRELIHGGRGELAIEKYIR-QSVPSIRHDGMSKVLSGITTLEEVLRV 517