Pairwise Alignments

Query, 153 a.a., prepilin-type cleavage/methylation domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 142 a.a., prepilin-type N-terminal cleavage/methylation domain from Pseudomonas stutzeri RCH2

 Score = 90.9 bits (224), Expect = 8e-24
 Identities = 62/153 (40%), Positives = 81/153 (52%), Gaps = 22/153 (14%)

Query: 5   KNKQQKGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSAIGVGLANITALKTNIEDYIAT 64
           K + QKGFTLIELMIVVA+IG+LAAIA+P YQ+Y  +S     LA IT  K   E  +  
Sbjct: 2   KTQMQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRSNAAAALAEITPGKIGFEQAV-N 60

Query: 65  EGSFPATTA------GTAAGFTRLGT----VEDMGDGKIVIAPTASGALGGTIKYTFDAG 114
           EG  P+TTA      G  A  +  G      +  G G I  A T     GG      +AG
Sbjct: 61  EGKTPSTTAADPGYIGVGATTSYCGVTVTFTQATGVGSIACATT-----GG------NAG 109

Query: 115 VVSSSKIQLARDANGLWTCSTTVTSEIAPKGCT 147
             +S  I L R A G W+C++T+ ++  P  C+
Sbjct: 110 KFNSKTITLNRTAEGAWSCASTLDAKYKPGKCS 142