Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N2E2

 Score = 76.3 bits (186), Expect = 4e-19
 Identities = 65/186 (34%), Positives = 83/186 (44%), Gaps = 37/186 (19%)

Query: 10  LARKVPSPHCDVRHDSED----ISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFK 65
           LA     P  D RH S +    I  +VVH  S                    A+      
Sbjct: 13  LAGCASGPRLDTRHPSVNHDNRIQFVVVHYTS--------------------ASLERSLA 52

Query: 66  VIAKMRVSAHCVIRRD--GEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFV 123
           ++    VSAH +I  D    + + V    RAWHAG S + GR   N  SIGIE+    FV
Sbjct: 53  LLTHGEVSAHYLIGDDKGATIYKLVDESQRAWHAGESEWEGRTWLNSSSIGIEIVNPGFV 112

Query: 124 ---------PYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRR 174
                    PY++AQ QAL  L + ++ R   I    I GH  IAPLRK DPG +F W+R
Sbjct: 113 DTPTGRLWYPYSEAQVQALIVLLKDIIQR-NGINPRSIIGHSDIAPLRKLDPGPLFPWKR 171

Query: 175 F-RAGL 179
             +AGL
Sbjct: 172 LAQAGL 177