Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 186 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD from Pseudomonas fluorescens FW300-N2E2

 Score =  194 bits (492), Expect = 1e-54
 Identities = 98/176 (55%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 4   SQGWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSF 63
           + GW    R  PSP+ + R + E ISLLV+HNISLPP QF    +++FF   LD  +H +
Sbjct: 6   ASGWCEGVRHCPSPNFNARPEGE-ISLLVIHNISLPPAQFATGKVQEFFQNRLDVTEHPY 64

Query: 64  FKVIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFV 123
           F  IA +RVSAH +I RDG V QFV    RAWHAGVS F GR  CND+S+GIELEG+D +
Sbjct: 65  FVGIADLRVSAHFLIERDGAVTQFVSCLDRAWHAGVSCFEGREACNDFSLGIELEGTDDL 124

Query: 124 PYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGL 179
           P+TDAQY AL +LT+ L   +  IT+ RI GH  IAP RKTDPG  FDW R+RA L
Sbjct: 125 PFTDAQYVALVDLTRQLQAAFRAITVQRICGHSDIAPGRKTDPGPAFDWVRYRAAL 180