Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 182 a.a., N-acetylmuramoyl-L-alanine amidase, family 2 from Pseudomonas syringae pv. syringae B728a

 Score =  194 bits (492), Expect = 1e-54
 Identities = 99/176 (56%), Positives = 122/176 (69%), Gaps = 1/176 (0%)

Query: 4   SQGWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSF 63
           + GW    +  PSP+ + R + E ISLLV+HNISLPP QF    ++ FF  +LD ++H +
Sbjct: 6   ASGWCDGVQHCPSPNFNARPEGE-ISLLVIHNISLPPAQFKTGKVQAFFQNQLDIDEHPY 64

Query: 64  FKVIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFV 123
           F  IA +RVSAH +I RDGEV+QFV    RAWHAGVSSF GR  CND+S+GIELEG+D  
Sbjct: 65  FVGIADLRVSAHFLIERDGEVIQFVSCLDRAWHAGVSSFQGREGCNDFSVGIELEGTDDQ 124

Query: 124 PYTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGL 179
           P+TDAQY AL +LT+ L   +  IT  RI GH  +AP RKTDPG  FDW RFRA L
Sbjct: 125 PFTDAQYDALIDLTRQLRQAFEAITPERICGHSDVAPGRKTDPGPCFDWARFRAAL 180