Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., N-acetylmuramoyl-L-alanine amidase, family 2 from Synechococcus elongatus PCC 7942

 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 43/129 (33%), Positives = 56/129 (43%), Gaps = 22/129 (17%)

Query: 71  RVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRA---------KCNDYSIGIELE--- 118
           + S H +IRR+G +V  VP   RA+ AG SSF G A           N++S+ + LE   
Sbjct: 167 QASYHALIRRNGTIVYTVPPEKRAFGAGSSSFRGEAVRFNPKLPGSVNNFSLHVSLESPA 226

Query: 119 -GSD----FVPYTDAQYQALTELTQALMVRYPHITLP--RITGHQYIAPLRKTDPGLVFD 171
            G D       YT  QY +L  L Q  M  Y   T+P  RIT H  +           F 
Sbjct: 227 DGRDNRRRHSGYTARQYDSLALLAQQWMTTY---TIPGDRITTHAAVDRSGSRMDPRSFQ 283

Query: 172 WRRFRAGLK 180
           W R    L+
Sbjct: 284 WARLAQRLQ 292