Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) from Shewanella amazonensis SB2B

 Score =  197 bits (500), Expect = 1e-55
 Identities = 102/171 (59%), Positives = 117/171 (68%), Gaps = 1/171 (0%)

Query: 5   QGWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFF 64
           QGW   AR   SP  + R   E ISLLV+HNISLP GQFG PYIE  F G LD + H  F
Sbjct: 11  QGWINRARHSQSPFFNSRPQGE-ISLLVIHNISLPAGQFGLPYIEALFQGCLDCDAHPSF 69

Query: 65  KVIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVP 124
             +  + VSAH +IRR+GE+VQFV    RAWHAGVS F GR  CND+++GIELEG+D +P
Sbjct: 70  ADLQGLEVSAHFLIRRNGELVQFVSCEDRAWHAGVSKFNGREGCNDFAVGIELEGTDDLP 129

Query: 125 YTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRF 175
           +TD QYQ L ELT ALM  YP IT  RI GH  IAP RKTDPG  FDW R+
Sbjct: 130 FTDLQYQVLRELTLALMAEYPDITQDRIVGHSDIAPGRKTDPGPKFDWARY 180