Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., AmpD (negative regulator of AmpC) (NCBI) from Rhodospirillum rubrum S1H

 Score = 90.1 bits (222), Expect = 3e-23
 Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 22/163 (13%)

Query: 16  SPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFKVIAKMRVSAH 75
           SP+ D R   + I +LV+H   +P  Q          L  L         +  + +VSAH
Sbjct: 17  SPNADDRPPGQIIDMLVIHYTGMPSAQAA--------LARL---------LDPQAQVSAH 59

Query: 76  CVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIEL--EGSDF--VPYTDAQYQ 131
            +I  DG   + V    RAWHAGVS++ GR   N  SIGIEL   G +F   P+ +AQ  
Sbjct: 60  WLIDEDGTAYKLVEERRRAWHAGVSAWGGRPGVNARSIGIELVNPGHEFGYRPFPEAQMT 119

Query: 132 ALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRR 174
            L  L + ++ R+P I    + GH  +AP RK DPG +FDW+R
Sbjct: 120 TLIALGRGILERHP-IPAAHVVGHADVAPTRKEDPGELFDWQR 161