Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., N-acetylmuramoyl-L-alanine amidase from Rhodopseudomonas palustris CGA009

 Score = 81.6 bits (200), Expect = 1e-20
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 28/171 (16%)

Query: 14  VPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFKVIAKMRVS 73
           +PSP+   R+ +    ++V+H   +P               +++       K  A   VS
Sbjct: 42  LPSPNYGERNKARRPDMIVLHYTGMP---------------DVEGALTRLCK--AGTEVS 84

Query: 74  AHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIEL--EGSD--FVPYTDAQ 129
           AH V+  DG ++Q VP   RAWHAGV+S+AG    N  SIGIE+   G D  +  Y   Q
Sbjct: 85  AHYVVLEDGRILQCVPESKRAWHAGVASWAGEEDINSCSIGIEIINRGHDWGYPDYPLRQ 144

Query: 130 YQALTELTQALMVRY---PHITLPRITGHQYIAPLRKTDPGLVFDWRRFRA 177
             A+  L + +++R    PH    R+ GH  +AP RK DPG  F WR   A
Sbjct: 145 IAAVIALCRGIILRRDVPPH----RVVGHSDVAPARKKDPGEKFPWRSLAA 191