Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 184 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) from Shewanella loihica PV-4

 Score =  195 bits (495), Expect = 4e-55
 Identities = 100/175 (57%), Positives = 119/175 (68%), Gaps = 1/175 (0%)

Query: 5   QGWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFF 64
           +GW R  R+  SPH + R D E +SLLV+HNISLP GQFG PYI+Q F G LD      F
Sbjct: 8   KGWIRECRQCVSPHFNARPDDE-VSLLVIHNISLPAGQFGLPYIDQLFQGCLDIQADESF 66

Query: 65  KVIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVP 124
             +  + VSAH +IRRDGE+VQ+V    RAWHAGVSSFAGR  CND++IGIELEG+D + 
Sbjct: 67  CDLQGLEVSAHFLIRRDGELVQYVSCDDRAWHAGVSSFAGRTGCNDFAIGIELEGTDSLA 126

Query: 125 YTDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGL 179
           YTD QY+ LT+LT  L   YP +    I GH  IAP RKTDPG  FDW R+R  L
Sbjct: 127 YTDEQYERLTQLTLVLFDAYPMLNRNLIVGHSDIAPGRKTDPGESFDWHRYRVSL 181