Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 181 a.a., AmpD protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  197 bits (500), Expect = 1e-55
 Identities = 101/175 (57%), Positives = 122/175 (69%), Gaps = 1/175 (0%)

Query: 6   GWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFK 65
           GW+  AR+  SPH + R   E ISLLV+HNISLP G FG PYI+Q F G LD N  + F 
Sbjct: 6   GWFTAARRCESPHFNQRPFGE-ISLLVIHNISLPAGCFGLPYIDQLFQGCLDTNADNSFA 64

Query: 66  VIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVPY 125
            +A ++VSAH +IRRDGE VQ+V    RAWHAGVS +  R  CND+SIGIELEG+D  PY
Sbjct: 65  DLAGLKVSAHFLIRRDGECVQYVSCDDRAWHAGVSRYGERENCNDFSIGIELEGTDTEPY 124

Query: 126 TDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGLK 180
           T AQYQ L ELTQAL+ +Y  ++  RI GH  IAP+RKTDPG  FDW R+   L+
Sbjct: 125 TAAQYQQLVELTQALLAQYSSLSAERIVGHCDIAPVRKTDPGPSFDWERYLTKLR 179