Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 212 a.a., N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 89.7 bits (221), Expect = 3e-23
 Identities = 52/114 (45%), Positives = 67/114 (58%), Gaps = 6/114 (5%)

Query: 69  KMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVPYTDA 128
           + +VSAH VI RDG V++ VP HLRAWHAG  ++ G    N  SIGIEL+     P++  
Sbjct: 26  RAQVSAHYVIGRDGAVMRLVPEHLRAWHAGAGAWGGCTDVNSASIGIELDNDGTSPFSAP 85

Query: 129 QYQALTELTQALMVRYPHITLPR--ITGHQYIAPLRKTDPGLVFDWRRF-RAGL 179
              AL  L   ++ R+    +PR  + GH  +AP RK DPG  FDWRR  R GL
Sbjct: 86  LMDALEGLLGDILTRH---GIPRKGVIGHSDLAPGRKIDPGPRFDWRRLARRGL 136