Pairwise Alignments

Query, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

Subject, 181 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) from Shewanella sp. ANA-3

 Score =  204 bits (520), Expect = 5e-58
 Identities = 105/175 (60%), Positives = 124/175 (70%), Gaps = 1/175 (0%)

Query: 6   GWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFK 65
           GWYR AR+  SPH + R   E ISLLV+HNISLP G FG PYI+Q F G LD +    F 
Sbjct: 6   GWYRAARRCESPHFNRRPFGE-ISLLVIHNISLPAGCFGLPYIDQLFQGCLDTSADESFA 64

Query: 66  VIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVPY 125
            +A + VSAH +IRRDGE VQ+V    RAWHAGVS +  R  CND+SIGIELEG+D  PY
Sbjct: 65  DLAGLEVSAHFLIRRDGECVQYVSCEDRAWHAGVSRYGERENCNDFSIGIELEGTDTEPY 124

Query: 126 TDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGLK 180
           T AQYQ LT LTQAL+ +YP +T  RI GH  IAP+RKTDPG  FDW+R+ A L+
Sbjct: 125 TAAQYQQLTALTQALLAQYPALTAERIVGHCDIAPMRKTDPGPSFDWQRYLAALR 179