Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., Tyrosine recombinase XerC from Pseudomonas fluorescens FW300-N2E2

 Score =  187 bits (474), Expect = 3e-52
 Identities = 113/292 (38%), Positives = 167/292 (57%), Gaps = 6/292 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEW-MAQNQYRLDFISFAGLQEYQSWLSEQN 70
           ++ + + +  ER ++ +T+++YR DL K+L W   QN      +    L+   + L +Q 
Sbjct: 5   LDAYCEHLRSERQVSPHTLSAYRRDLEKVLGWCQKQNIGSWAALDIQRLRSLIARLHQQG 64

Query: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130
               S AR+LSA+R L+ YL+RE +   DP+  L  PK   RLPK L   +   LL    
Sbjct: 65  QSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRALQLLEGAV 124

Query: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
               L  RD+AMLEL Y++GLR++EL  L ++ + L  G+V+V+GKG K RL+P+G  A 
Sbjct: 125 EDDFLARRDQAMLELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGRKAR 184

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
           E +E +L       L     D VF S +G+++  +    R+K  A       + L PH+L
Sbjct: 185 EALEQWLP---LRALSNPADDAVFVSQQGRRLGPRAIQLRVK--AAGERELGQNLHPHML 239

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           RH+FA+HLL    DLR VQ LLGHSD+ TTQIYTH+  + L  +++  HPRA
Sbjct: 240 RHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRA 291