Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., tyrosine recombinase XerC from Pseudomonas stutzeri RCH2

 Score =  177 bits (449), Expect = 3e-49
 Identities = 110/298 (36%), Positives = 173/298 (58%), Gaps = 12/298 (4%)

Query: 9   QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAG--LQEYQSWL 66
           Q  ++ + + +   R L+ +++  YR DL+KLL    + Q   D+    G  L++  + L
Sbjct: 2   QNELDAYFEHLRSARQLSGHSLEGYRRDLNKLLAHCEREQIA-DWRGLQGRHLRQLIAEL 60

Query: 67  SEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALL 126
             Q     S AR+LS++R L++YL++E +   DP+A L +PK   RLPK L   +   LL
Sbjct: 61  HRQGQSSRSLARLLSSVRGLYRYLNQEGICQHDPAAGLSAPKGERRLPKLLDTDRAMQLL 120

Query: 127 SAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMG 186
                   + LRD+AMLEL Y++GLR++ELV L ++ + L  G+VRV+GKG K R +P+G
Sbjct: 121 DGGVEDDFIALRDQAMLELFYSSGLRLSELVGLNLDQLDLPAGLVRVLGKGNKVRELPVG 180

Query: 187 ENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDV--EK 244
             A E ++ +L       L       VF   +G+++  +    R++     AG+    + 
Sbjct: 181 RKAREALQAWLP---IRALANPADGAVFIGQQGRRLGARAVQMRVRQ----AGVRELGQH 233

Query: 245 LSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           L PH+LRH+FA+HLL    DLR VQ LLGH+D+ TTQIYTH+  + L +++++ HPRA
Sbjct: 234 LHPHMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQHLAKVYDQAHPRA 291