Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas stutzeri RCH2

 Score =  332 bits (850), Expect = 8e-96
 Identities = 163/294 (55%), Positives = 215/294 (73%), Gaps = 1/294 (0%)

Query: 8   DQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLS 67
           D  +++++LD +W E+GLA+N+  +YR+DL+    W+++   RL       + ++ +W  
Sbjct: 5   DDSVIDRYLDALWLEKGLADNSREAYRSDLALFNGWLSERGVRLAVAGREIILDHLAWRL 64

Query: 68  EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127
              YK  S AR LS +R  ++YL RE   A DP+  +  P+L   LPK LSEA VEALL+
Sbjct: 65  NNGYKARSTARFLSGLRGFYRYLLREGEIAVDPTLRVDLPRLGRPLPKALSEADVEALLA 124

Query: 128 APDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGE 187
           APD   P+ LRD+AMLE+LYA GLRVTEL+SLT+E +S+RQGV+R  GKG KERLVP+G+
Sbjct: 125 APDLGDPIGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPLGD 184

Query: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSP 247
            A+ W+E + ++GR  LLG +  D++FPS RG QMTRQTFWHRIK +A +AGI    +SP
Sbjct: 185 EALHWLERYQREGRDELLGGKARDVLFPSLRGDQMTRQTFWHRIKLHAKVAGI-ATSISP 243

Query: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301
           H LRHAFATHLLN+GADLR VQMLLGHSDLSTTQIYTH+A  RL++LH +HHPR
Sbjct: 244 HTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHAQHHPR 297