Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., tyrosine recombinase XerC subunit from Pseudomonas syringae pv. syringae B728a

 Score =  179 bits (454), Expect = 7e-50
 Identities = 108/282 (38%), Positives = 163/282 (57%), Gaps = 6/282 (2%)

Query: 22  ERGLAENTVASYRNDLSKLLEWMAQNQYRL-DFISFAGLQEYQSWLSEQNYKPTSKARML 80
           ER ++ +T+ +YR DL K+L +  + Q      +    L+ + +   +Q     S ARML
Sbjct: 15  ERQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARML 74

Query: 81  SAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDPQSPLELRDK 140
           SA+R  ++YL+RE +   DP+  L  PK   RLPK L   +   LL        L  RD+
Sbjct: 75  SAVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQ 134

Query: 141 AMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIEWIETFLQQG 200
           A+LELLY++GLR++EL  L ++ + LR G+V+V+GKG K R++P+G  A + +E +L   
Sbjct: 135 AILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLP-- 192

Query: 201 RSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLN 260
               L     D VF S +G+++  +    R+K  A       + L PH+LRH+FA+HLL 
Sbjct: 193 -LRALTNPQDDAVFVSQQGKRLGPRAIQVRLK--AAGERELGQNLHPHMLRHSFASHLLE 249

Query: 261 YGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
              DLR VQ LLGH+D+ TTQIYTH+  + L  +++  HPRA
Sbjct: 250 SSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRA 291