Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., site-specific tyrosine recombinase XerC from Sinorhizobium meliloti 1021

 Score =  138 bits (348), Expect = 2e-37
 Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 15/299 (5%)

Query: 14  QFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQY---RLDFISFAGLQEYQSWLSEQN 70
           ++L ++  ER L+E TV +Y  D  + L ++  +     RL  I      + + +L+++ 
Sbjct: 37  RWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALRPADLRGFLAQRR 96

Query: 71  YKPTSK---ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLS 127
                     R L+ +R   +YL R  +     +  + SPK P  LPK L++ +   +++
Sbjct: 97  KGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPKALTDREALKVVT 156

Query: 128 APDPQSPLE----LRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLV 183
           A D Q   E     R+ A+L LLY  GLR+ E + LT  + S     +RV GKGGK R+V
Sbjct: 157 A-DAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLRVTGKGGKTRIV 215

Query: 184 PMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVE 243
           PM   A E +ET+ +     +  E+    +F  +RG ++        ++      G+  +
Sbjct: 216 PMIAAAAEAVETYRKLCPYHIEPEEP---IFRGARGAKLQPAIIQREMQKLRAALGLP-D 271

Query: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
             +PH LRH+FATHLL  G DLR +Q LLGH+ LSTTQ+YT V + RL ++++  HPRA
Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 330