Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  219 bits (558), Expect = 6e-62
 Identities = 132/299 (44%), Positives = 177/299 (59%), Gaps = 11/299 (3%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71
           VE FL+ M  ERG A NT+ SY  DL     ++      L   S   L+ Y S L+ Q +
Sbjct: 9   VEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAGQGF 68

Query: 72  KPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDP 131
           K +S+AR LSA+R+ +++L+ E +R DDP+ +L +PK    LPK LS   V  L+   + 
Sbjct: 69  KASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQAEA 128

Query: 132 QSP-------LELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVP 184
           ++         +LR  A++ELLYATG+RV+ELVSL    ++     + + GKG KERLVP
Sbjct: 129 EAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKERLVP 188

Query: 185 MGENAIEWIETFLQQGRSLLLGEQTSDIVFPSS-RGQQMTRQTFWHRIKHYAVIAGIDVE 243
           + + AI  +  +   G +L      S  +FPS+ +   + RQ F   +K  A  AGI V 
Sbjct: 189 LSQAAIRAMRAY---GEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245

Query: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
            +SPHVLRHAFA+HLL  GADLR VQ LLGHSD+STTQIYTHV  ERL  L   HHP A
Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLA 304