Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., integrase/recombinase XerC (RefSeq) from Shewanella amazonensis SB2B

 Score =  174 bits (441), Expect = 2e-48
 Identities = 107/291 (36%), Positives = 171/291 (58%), Gaps = 7/291 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71
           +E+F   +  ER L+  TV +YR +L +    + Q  ++   +S   L    + L  Q  
Sbjct: 8   LERFTRYLATERQLSPMTVRNYRFELERADTLLGQRSWQQ--LSRQDLSGLMARLHRQGL 65

Query: 72  KPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDP 131
            P S +   SA+++  Q+L +E +   +P+A L +PK    LPK+L    V  LL  P P
Sbjct: 66  SPRSLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPKNLDPDSVNHLLDIP-P 124

Query: 132 QSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIE 191
           +  L LRDKA++EL Y+ GLR+ EL +L ++++      VRV+GKG KER++P+G  A+ 
Sbjct: 125 EDGLALRDKAIMELFYSCGLRLAELAALDVKDLDRESREVRVIGKGSKERILPVGSVALA 184

Query: 192 WIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLR 251
            I  +L+    +   +   D +F SSRG +++ ++   R++ +A I G+ V  + PH LR
Sbjct: 185 AIGDWLKVRNQMPCQD---DALFVSSRGSRLSHRSIQARMEKWAQIQGLSVG-VHPHKLR 240

Query: 252 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           H+FATH+L    DLR VQ LLGH++L+TTQIYT +  + L ++++  HPRA
Sbjct: 241 HSFATHMLESSGDLRAVQELLGHANLATTQIYTSLDFQHLAKVYDGAHPRA 291