Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

 Score =  146 bits (369), Expect = 6e-40
 Identities = 105/292 (35%), Positives = 157/292 (53%), Gaps = 18/292 (6%)

Query: 22  ERGLAENTVASYRNDLSKLLEWMAQNQYR-----LDFISFAGLQEYQSWLSE---QNYKP 73
           ER  + +T+ +Y  DL+  L ++    YR     L  ++  G  +++++++    Q    
Sbjct: 45  ERRASRHTLDAYGRDLAAFLTFL--RDYRGEEPGLATLASLGPADFRAYMAARLTQGLSR 102

Query: 74  TSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQ-VEALLSAPDPQ 132
            S AR LS +R LF++L RE V  +   A + SP+ P  +PK LSE++ ++AL  A D Q
Sbjct: 103 PSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDALSVASDLQ 162

Query: 133 SP--LELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
               L  RD A+  LLY  GLR+ E + L   ++   + V+R+ GKG KERLVP+    +
Sbjct: 163 DDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGE-VMRITGKGRKERLVPLLPVVV 221

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
           E +  +L    +        D +F  SRG+++       +++      G+  E  +PH L
Sbjct: 222 EALADYLA---ACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLGLP-ETATPHAL 277

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           RH+FATHLL  G DLR +Q LLGH+ LSTTQ YT V    L  LH   HPRA
Sbjct: 278 RHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHPRA 329