Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., putative tyrosine recombinase XerC from Phaeobacter inhibens DSM 17395

 Score =  145 bits (365), Expect = 2e-39
 Identities = 101/302 (33%), Positives = 161/302 (53%), Gaps = 18/302 (5%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQN---QYRLDFISFAGLQEYQSWLSE 68
           +EQ+L  +   +G AENT+ +YR D+ + L +M  +      L  ++     + ++W++ 
Sbjct: 17  LEQWLAGLAALQGAAENTITAYRGDVVEFLAFMTHHFGGPQGLGALAEISTGDMRAWMAA 76

Query: 69  QNYKPT---SKARMLSAIRRLFQYLHREKVRADDPSALLV--SPKLPTRLPKDLSEAQVE 123
                T   S AR LSA++  + +L   +    +P+A+L   SPK   +LP+ L+E    
Sbjct: 77  TRATGTGARSLARKLSAVKSFYTWLAERQ--GFEPTAVLSARSPKFQKKLPRPLAEDAAR 134

Query: 124 ALLSAPDPQSPLE---LRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKE 180
           A++   + QS  +    RD A++ LLY  GLR++E + LT  +  L   V+R+ GKGGKE
Sbjct: 135 AVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGADAPL-PAVLRITGKGGKE 193

Query: 181 RLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGI 240
           R+VP+   A   ++ +L   R     ++ +  +F   RG  +  +     +       G+
Sbjct: 194 RIVPVLHAARAAVDRYL---RLCPHPQERAAPLFRGVRGGALNARLIRSAMAQARAQLGL 250

Query: 241 DVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300
                +PH LRH+FATHLL  G DLR +Q LLGH+ LSTTQ YT V T  L  ++N  HP
Sbjct: 251 PASA-TPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHP 309

Query: 301 RA 302
           +A
Sbjct: 310 KA 311