Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., tyrosine recombinase XerD from Phaeobacter inhibens DSM 17395

 Score =  191 bits (486), Expect = 2e-53
 Identities = 114/310 (36%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 2   SEALSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQE 61
           + A   D   +  FLD    + G A NT+ +Y  DL  +  W+          +   ++ 
Sbjct: 9   ANAPKDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNRAFGSATRDDIES 68

Query: 62  YQSWLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQ 121
           Y      +     ++AR LSAI++++++   E  R+D+P+  +  P     LPK L   +
Sbjct: 69  YLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPKTLEVIE 128

Query: 122 VEALLSAPDPQSPL---ELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGG 178
           V+ LL A           LR+  M+ELLYATG+RV+ELV L +        ++ V+GKGG
Sbjct: 129 VDRLLDAARQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLLVLGKGG 188

Query: 179 KERLVPMGENAIEWIETFLQ-----QGRSLLLGEQTSDIVFPS-SRGQQMTRQTFWHRIK 232
           KER+VP+   A + +  +L      +  ++  G   S  +FPS  +   +TR  F+  IK
Sbjct: 189 KERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHRFYLLIK 248

Query: 233 HYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLK 292
            +AV  G+  E +SPH LRHAFATHLL  GADLR +Q LLGH+D++TT+IYTHV   RL 
Sbjct: 249 EFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLS 308

Query: 293 QLHNEHHPRA 302
           +L  EHHP A
Sbjct: 309 ELVLEHHPLA 318