Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  323 bits (827), Expect = 4e-93
 Identities = 169/291 (58%), Positives = 213/291 (73%), Gaps = 1/291 (0%)

Query: 11  LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70
           L+E FLD +W  +GL+++T+ +YR+DLS    ++ +    L   S A +++Y +   E  
Sbjct: 13  LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHG 72

Query: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130
           +  TS AR+LS++RR ++YL  +K+   DP A++  PKL  +LP  LSEA V+ LLS P+
Sbjct: 73  FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132

Query: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
            + P+E RD+AMLELLYA+GLRV+ELV LT++ MSLRQGVVR++GKG KERLVP GE A 
Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
             IE +L+  R  LL  + SD+VFPS RG  MTRQTFWHRIK YA  AGI V  LSPH L
Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVH-LSPHTL 251

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301
           RHAFATHLLN+GADLRVVQ+LLGHSDLSTTQIYTHVA  RL QLH  HHPR
Sbjct: 252 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302