Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 297 a.a., tyrosine recombinase XerC (RefSeq) from Shewanella loihica PV-4

 Score =  176 bits (445), Expect = 8e-49
 Identities = 109/291 (37%), Positives = 177/291 (60%), Gaps = 6/291 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71
           V++F+  +  ER L+ +TV +YR +L ++ E + +N    + +S   LQ   + L  +  
Sbjct: 6   VQEFVSYLVSERQLSPHTVRNYRFELERVGELLPENFIWAE-VSDEQLQAVLNKLHRKGL 64

Query: 72  KPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDP 131
            P S A  LSA+++   YL +E     DP   L +PK    LPK++    V  LLS  + 
Sbjct: 65  GPRSIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKPLPKNMDLDSVTHLLSI-EG 123

Query: 132 QSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAIE 191
              L LRDKA++EL Y++GLR+ EL +L   +++  +  V+VMGKG KER+VP+G  A+ 
Sbjct: 124 DDALALRDKAIMELFYSSGLRLAELAALDTRDIASGEHQVKVMGKGSKERIVPIGRMALS 183

Query: 192 WIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVLR 251
            I+ +L+  RSLL  E   D +F +++G+++  ++   R+  +  + G++  ++ PH LR
Sbjct: 184 AIDDWLKV-RSLLPCED--DALFVTAKGKRLAHRSIQARLNKWGQLQGLNA-RVHPHKLR 239

Query: 252 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
           H+FATH+L   ADLR VQ LLGH++LSTTQ+YT +  + L ++++  HPRA
Sbjct: 240 HSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRA 290