Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., Probable integrase/recombinase from Mycobacterium tuberculosis H37Rv

 Score =  173 bits (439), Expect = 4e-48
 Identities = 113/307 (36%), Positives = 175/307 (57%), Gaps = 20/307 (6%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWL----- 66
           ++ +LD +  ERG+A NT++SYR DL +  + + +    +  ++  G  +   +L     
Sbjct: 8   LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERG--ITDLAKVGEHDVSEFLVALRR 65

Query: 67  -----SEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQ 121
                        S AR L A+R L ++   E +   D +  +  P    RLPK L+  +
Sbjct: 66  GDPDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDE 125

Query: 122 VEALLSAPD----PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKG 177
           V +LL           PL LR++A+LELLY+TG R++E V L ++++      V + GKG
Sbjct: 126 VLSLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKG 185

Query: 178 GKERLVPMGENAIEWIETFLQQGRSLLL--GEQTSDIVFPSSRGQQMTRQTFWHRIKHYA 235
           GK+RLVP+G  A+  ++ +L +GR  L   G  T+ I F ++RG +++RQ+ W  ++  A
Sbjct: 186 GKQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAI-FLNARGGRLSRQSAWQVLQDAA 244

Query: 236 VIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLH 295
             AGI    +SPH+LRH+FATHLL  GAD+RVVQ LLGH+ ++TTQIYT V    L+++ 
Sbjct: 245 ERAGITAG-VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVW 303

Query: 296 NEHHPRA 302
              HPRA
Sbjct: 304 AGAHPRA 310