Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  163 bits (412), Expect = 5e-45
 Identities = 103/294 (35%), Positives = 173/294 (58%), Gaps = 12/294 (4%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71
           ++QF   M  ER L+ +TV +Y  +L +  E + +    +D ++  G + +Q  L++ + 
Sbjct: 9   LQQFEAYMQSERQLSAHTVRNYLYELQRGRELLPEG---IDLLN-VGREHWQQVLAKLHR 64

Query: 72  K---PTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128
           K   P S +  LSA+++  ++L R      +P+  L +PK    LPK++    +  LL  
Sbjct: 65  KGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLLEI 124

Query: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188
            D   PL LRDKA++EL Y++GLR+ EL +L + ++   Q  VRV+GKG KER+VP+G  
Sbjct: 125 -DGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPVGRY 183

Query: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPH 248
           AI+ I  +L+  R +   +     +F + +G++++ ++   R+  +     + + ++ PH
Sbjct: 184 AIDAISAWLECRRQIPCEDNA---LFVTEKGKRLSHRSIQARMSKWGQEQALSM-RVHPH 239

Query: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
            LRH+FATH+L   ADLR VQ LLGH +LSTTQIYT +  + L ++++  HPRA
Sbjct: 240 KLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293