Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  341 bits (874), Expect = 1e-98
 Identities = 174/291 (59%), Positives = 216/291 (74%), Gaps = 1/291 (0%)

Query: 11  LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70
           L++ FLD +W  +GL++NT+++YR DL     ++     RL  +  A ++ Y ++  EQ 
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVEQQ 69

Query: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130
           +  TS AR+LS++RR + YL + K  + DP A + SPKL   LP  LSE+QV+ LL+ P+
Sbjct: 70  FARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPN 129

Query: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
              P+E RDKAMLELLYATGLRV+ELV LTME MSLRQG+VR++GKGGKERLVPMGE AI
Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEMAI 189

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
             +E +L   R  LLG   SD+VFPS R Q MTRQTFWHRIK YA  AGI+ E LSPH L
Sbjct: 190 TEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE-LSPHTL 248

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301
           RHAFATHLLN+GADLRVVQ+LLGHSDLSTTQIYTHVA  RL++LH +HHPR
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299