Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., tyrosine recombinase XerC from Klebsiella michiganensis M5al

 Score =  184 bits (467), Expect = 2e-51
 Identities = 119/308 (38%), Positives = 175/308 (56%), Gaps = 26/308 (8%)

Query: 6   SPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSW 65
           SP    VE+FL  +  ER L+  T+ +YR  L  L+  +A+N         AGL+ +Q  
Sbjct: 4   SPLLPSVERFLRYLGVERQLSPITLLNYRRQLETLIA-LAEN---------AGLKSWQQC 53

Query: 66  LS-----------EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLP 114
            +            Q   P S A  LSA+R  F +L  +   A +P+  + +PK P  LP
Sbjct: 54  DAAQVRSLAVRSRRQGLGPASLALRLSALRSFFDWLVSQGELAANPAKGISAPKTPRHLP 113

Query: 115 KDLSEAQVEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVM 174
           K++    V  LL   D   PL +RD+AMLE++Y  GLR++ELV+L ++++ L  G V VM
Sbjct: 114 KNIDVDDVNRLLDI-DLNDPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWVM 172

Query: 175 GKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHY 234
           GKG KER +P+G NA+ WIE +L   R L   ++  D +F S  G++++ +    R   +
Sbjct: 173 GKGSKERRLPIGRNAVAWIEHWLDL-RGLFGADE--DALFLSKLGKRISARNVQKRFAEW 229

Query: 235 AVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQL 294
            V  G++   + PH LRH+FATH+L    DLR VQ LLGH++LSTTQIYTH+  + L  +
Sbjct: 230 GVKQGLN-SHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASV 288

Query: 295 HNEHHPRA 302
           ++  HPRA
Sbjct: 289 YDAAHPRA 296