Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  123 bits (309), Expect = 7e-33
 Identities = 74/188 (39%), Positives = 111/188 (59%), Gaps = 4/188 (2%)

Query: 115 KDLSEAQVEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVM 174
           K LS A VE++         +  RD A+ ELLY +GLR++E + L + +     GVVRV+
Sbjct: 239 KPLSTA-VESMSGDTLHAEAIRRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVL 297

Query: 175 GKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHY 234
           GKG KER+ P+ + +++ +  +L     L    +    +F  +RG ++ R+     I   
Sbjct: 298 GKGSKERMSPLSDTSVDALREWLHFRHHL--ASEGERALFVGARGDRLDRRQATRIIDAL 355

Query: 235 AVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQL 294
              AG+  + +SPH LRH+FATHLL  GADLR VQ LLGH+ L+TTQ YTH+    L ++
Sbjct: 356 CRRAGLP-QSVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEV 414

Query: 295 HNEHHPRA 302
           +++ HPRA
Sbjct: 415 YDKAHPRA 422



 Score = 50.4 bits (119), Expect = 8e-11
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 3/118 (2%)

Query: 12  VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71
           +E FL  +  E+G +  TV +Y  DL +    +    + LD       +  Q +L+E + 
Sbjct: 46  LELFLAHVELEKGYSPATVTAYGTDLMQFHGVLTAEGFGLDAPEDVTRRHVQRYLAELHR 105

Query: 72  KPTSK---ARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALL 126
             T++   AR LSA+R  F+Y+ R +    DP A + +P+   R P+ L+  QV ALL
Sbjct: 106 LRTARSSVARKLSALRAFFRYMLRLRRVTADPVAAVHNPRQEKRQPRTLNVDQVFALL 163