Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella sp. ANA-3

 Score =  341 bits (875), Expect = 1e-98
 Identities = 176/291 (60%), Positives = 217/291 (74%), Gaps = 1/291 (0%)

Query: 11  LVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQN 70
           L++ FLD +W  +GL++NT+++YR DL     +      RL  +  A ++ Y ++  EQ 
Sbjct: 10  LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYQQGQGLRLIEVGQADVRAYLAYRVEQQ 69

Query: 71  YKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPD 130
           +  TS AR+LS++RR + YL + K  A DP AL+ SPKL  +LP  LSE+QV+ LL+ P+
Sbjct: 70  FARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEPN 129

Query: 131 PQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGENAI 190
              P+E RDKAMLELLYATGLRV+ELV LTME MSLRQG+VR++GKGGKERLVPMGE AI
Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELAI 189

Query: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
             +E +L   R  LLG   SD+VFPS R Q MTRQTFWHRIK YA  AGI+ E LSPH L
Sbjct: 190 TEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETE-LSPHTL 248

Query: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPR 301
           RHAFATHLLN+GADLRVVQ+LLGHSDLSTTQIYTHVA  RL++LH +HHPR
Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299