Pairwise Alignments

Query, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., tyrosine recombinase XerC (RefSeq) from Shewanella sp. ANA-3

 Score =  167 bits (424), Expect = 2e-46
 Identities = 106/297 (35%), Positives = 176/297 (59%), Gaps = 12/297 (4%)

Query: 9   QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68
           Q  ++QF   M  ER L+ +TV +Y  +L +  E + +    +D ++  G + +Q  L++
Sbjct: 6   QSYLQQFETYMQSERQLSAHTVRNYMYELQRGSELLPEG---VDLLN-VGREHWQQVLAK 61

Query: 69  QNYK---PTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEAL 125
            + K   P S +  LSAI++  ++L R  V   +P+  L +PK    LPK++    +  L
Sbjct: 62  LHRKGLSPRSLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHL 121

Query: 126 LSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPM 185
           L A +   PL LRDKA++EL Y++GLR+ EL +L + ++   Q  VRV+GKG KER+VP+
Sbjct: 122 L-AIEGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPV 180

Query: 186 GENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKL 245
           G  AIE I  +L+  + +   +     +F + +G++++ ++   R+  +     + + ++
Sbjct: 181 GRYAIEAISAWLKCRKQISCEDNA---LFVTEKGKRLSHRSIQARMSKWGQEQALSM-RV 236

Query: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302
            PH LRH+FATH+L   ADLR VQ LLGH +LSTTQIYT +  + L ++++  HPRA
Sbjct: 237 HPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293