Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 569 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  657 bits (1696), Expect = 0.0
 Identities = 335/578 (57%), Positives = 431/578 (74%), Gaps = 9/578 (1%)

Query: 2   IEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELL 61
           + I+ R  PD       + PLL RLY +RGV + A+L+K+   L  F+QL GID AV+LL
Sbjct: 1   MRIEPRQLPDTLPFLGDLPPLLTRLYAARGVQSEAELDKSLARLIPFQQLKGIDAAVDLL 60

Query: 62  FAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQ 121
             A+ +++RI++VGDFDADGAT+S + +L LR+LG+ +VDYLVPNRFE GYGL+PE+V+ 
Sbjct: 61  VTALEQRQRILIVGDFDADGATASTVGMLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 122 AIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAF 181
           A+ R  ++++TVDNG+SS+EGV  AK  GLQV+VTDHHLPG ELP  DA+VNPN   C F
Sbjct: 121 ALAREPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGLELPAADAIVNPNQPGCEF 180

Query: 182 PSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241
           PSKALAGVGV FY++MAL   +R  GW+A+    +P + EL+DLVALG+VADVVPLD NN
Sbjct: 181 PSKALAGVGVIFYVLMALRARLRSLGWYAS--TPQPNIGELLDLVALGSVADVVPLDANN 238

Query: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301
           RILVHQGL+RIRAG ARPGI+A++EVAKRDA R+ + D GF LGPR+NAAGRLDDMS G+
Sbjct: 239 RILVHQGLERIRAGRARPGIKAILEVAKRDASRITSTDLGFILGPRLNAAGRLDDMSLGI 298

Query: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361
           E LL ++   AR MA++LDG+NQ RK IE+GM++EA+A  + L +     +P+GL LF  
Sbjct: 299 ECLLTDDPALAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPV---ESMPFGLCLFDP 355

Query: 362 DWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGII 421
            WHQGVIGILASR+KE+Y RP IAFA+ GDG LKGS RSVPG H+RDAL  +  Q+P +I
Sbjct: 356 QWHQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVPGFHIRDALSVVAAQHPTLI 415

Query: 422 LKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAE 481
            K+GGHAMAAGLT+ E NF  F   FD  VR +L E  L G +LSDG L  EEF L  A 
Sbjct: 416 SKYGGHAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELAR 475

Query: 482 LLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDL 541
            LR  GPWGQ FPEP+F G F+++ Q++VGE+HLK++L    K    +V +DGIAF +D 
Sbjct: 476 ALRHAGPWGQHFPEPMFHGVFQLVEQRVVGERHLKVIL----KSECGSVKLDGIAFGIDR 531

Query: 542 RRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK 579
             WP+ +V+ V LAYKLD+NEFRG +++QLMI H+E +
Sbjct: 532 EIWPNPTVRWVELAYKLDLNEFRGQETVQLMIAHIEPR 569