Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., exonuclease RecJ from Pseudomonas syringae pv. syringae B728a

 Score =  670 bits (1729), Expect = 0.0
 Identities = 336/575 (58%), Positives = 432/575 (75%), Gaps = 7/575 (1%)

Query: 2   IEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELL 61
           + I+ RP PD       + PLL RLY +RGV+  A+L+K+   L  ++QL GID AV+LL
Sbjct: 1   MRIEPRPLPDTLPFLGDLPPLLTRLYAARGVACEAELDKSLARLIPYQQLKGIDAAVDLL 60

Query: 62  FAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQ 121
             A+ E +R+++VGDFDADGAT+S + VL LR+LG+ +VDYLVPNRFE GYGL+PE+V+ 
Sbjct: 61  VTALREGQRMLIVGDFDADGATASTVGVLGLRLLGAVHVDYLVPNRFEYGYGLTPEIVEV 120

Query: 122 AIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAF 181
           A++R  ++++TVDNG+SS+EGV  AK  GLQV+VTDHHLPG ELP  DA+VNPN   C F
Sbjct: 121 ALQREPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCTF 180

Query: 182 PSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241
           PSK+LAGVGV FY++MAL   +R+ GWF +    +P L EL+DLVALG+VADVVPLD NN
Sbjct: 181 PSKSLAGVGVIFYVLMALRARLRETGWFESNQRAQPNLGELLDLVALGSVADVVPLDANN 240

Query: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301
           RILVHQGL RIRAG ARPG++A++EVA+R+  R+ + D GF LGPR+NAAGRLDDMS G+
Sbjct: 241 RILVHQGLMRIRAGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGI 300

Query: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361
           E LLC++   AR MA +LD LNQ RK IE+GM++EA+A  + L L     +P+GL LF  
Sbjct: 301 ECLLCDDPTLAREMAVQLDELNQDRKSIEQGMQREALAQLKDLPL---ESMPFGLCLFDA 357

Query: 362 DWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGII 421
           +WHQGVIGILASR+KE+YHRP IAFA  G+G LKGS RSVPG H+RDALD +   +P +I
Sbjct: 358 EWHQGVIGILASRLKERYHRPTIAFASAGEGVLKGSARSVPGFHIRDALDAVAASHPHLI 417

Query: 422 LKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAE 481
            KFGGHAMAAGL++ E+NF  F   FDQ VR +LDE  L G +LSDG L  EEF L  A 
Sbjct: 418 SKFGGHAMAAGLSLPEENFPAFAAAFDQEVRRQLDEQDLTGRLLSDGSLAVEEFHLELAR 477

Query: 482 LLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDL 541
            LR  GPWGQ FPEPLF G F+++ Q++VGE+HLK++L    K    +V +DGIAF VD 
Sbjct: 478 ALRNAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKMVL----KTECGSVKLDGIAFGVDR 533

Query: 542 RRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576
             WP+ +++ V LAYKLD+NEFRGN+++QLM+ H+
Sbjct: 534 DIWPNPNIRWVELAYKLDLNEFRGNETVQLMVVHI 568