Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., exonuclease RecJ from Synechococcus elongatus PCC 7942

 Score =  254 bits (650), Expect = 6e-72
 Identities = 187/569 (32%), Positives = 292/569 (51%), Gaps = 42/569 (7%)

Query: 18  HIDPLLRRLYLSRGVSNVAQLEKAAKALHSF-----KQLHGIDRAVELLFAAIAEQKRII 72
           ++ P+L ++ ++RG+  +A      K          ++   +  +V LL  AI    RI 
Sbjct: 48  NLPPVLAQVLINRGLGAIADARDYLKPEQQELPDPREEFEDLVESVLLLEKAIRSGDRIA 107

Query: 73  VVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMT 132
           + GD+DADG TS+AL +   R LG++  +Y +P+R ++GYG++  +V++    G  +++T
Sbjct: 108 ICGDYDADGMTSTALLLRTFRQLGAK-AEYAIPSRMQEGYGINERIVEEFAASGVRVVLT 166

Query: 133 VDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVA 192
           VDNG+++ + +  A++ GL V+VTDHH    ELP  +A++NP L     P   LAGVGVA
Sbjct: 167 VDNGIAAYQPIARARELGLTVIVTDHHDLPPELPPANAILNPKLLPEESPYHGLAGVGVA 226

Query: 193 FYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRI 252
           + L + +     +Q       ++ P    L++L  LGT+AD+ PL   NR  + +GL R+
Sbjct: 227 YVLALCVAEQFNRQA-----ELIRP----LLELYTLGTIADLAPLTGVNRRWLQRGL-RL 276

Query: 253 RAGLARPGIQALIEVA--KRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIH 310
                  G+QAL+E A  K   R L   D GF LGPRINA GR+ D    +ELL   +  
Sbjct: 277 LPQSQLVGVQALMEAAGVKTSDRSLKPEDIGFKLGPRINAIGRIGDPQVVIELLTTEDRD 336

Query: 311 AARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGI 370
            A+ +A   +  NQ R+ + + + +EA+A  E  +  D+R+    LVL Q +WH GVIGI
Sbjct: 337 RAQELAGICEVTNQERRGLCDRITEEAIAIVE-AEGFDNRQTAV-LVLAQPNWHHGVIGI 394

Query: 371 LASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMA 430
           +ASR+ E+Y  PV   +   DG L+GS R  P   +  AL+        ++ +FGGH  A
Sbjct: 395 VASRLVERYGVPVFISSYEEDGHLRGSARGTPEFDVFAALEHC----RDVLGRFGGHRAA 450

Query: 431 AGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWG 490
            G ++  +N   +    +    + L     +  I  D EL     SL+  E  +   P+G
Sbjct: 451 GGFSLSAENLSAWRSRLEAFAADCLPVDCRRPAIQIDAELPIALASLNLFEQQQQLQPFG 510

Query: 491 QAFPEPLFDGE-FKVLHQKLV--GEKHLKLMLEPLYKGFPTNVMIDGIA-FNVDLRRWPD 546
            A  EPL+  +   +L Q+ +  G++HLKL L             DG +       RW D
Sbjct: 511 IANDEPLYWAKNLAILDQRRMGNGQEHLKLTLS------------DGQSKVTAVYWRWGD 558

Query: 547 ASV--KTVRLAYKLDINEFRGNQSLQLMI 573
             V    V +AY L  N +   + LQL I
Sbjct: 559 RPVPEDRVDVAYYLRENIWNDRRELQLEI 587