Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 775 a.a., exonuclease RecJ from Synechococcus elongatus PCC 7942

 Score =  189 bits (481), Expect = 3e-52
 Identities = 130/415 (31%), Positives = 216/415 (52%), Gaps = 35/415 (8%)

Query: 54  IDRAVELLFAAIAE-QKRIIVVGDFDADGATSSAL--SVLALRMLGSRNVDYLVPNRFED 110
           +D A+  L  A A    R+++ GDFDADG T++A+    L      +  + + +P+R + 
Sbjct: 69  MDGAIARLLQAHANPDDRLLIWGDFDADGLTATAVLWEGLGQYFPQTERLFWTIPDRLQQ 128

Query: 111 GYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDA 170
            +GL+ E ++QAI  G  +++T D G S  E +++A  +GL V+VTDHH    E P V A
Sbjct: 129 SHGLNLEGLEQAIANGITLVITCDTGCSDAELLQWASDRGLDVIVTDHHTLLPERPPVTA 188

Query: 171 MVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGT 230
           ++NP       P   L+GV VA+ L+ AL        + A        L  L+DLVA+G 
Sbjct: 189 LINPRQLPTDHPLATLSGVAVAYKLIEAL--------YQALPLATAQPLEHLLDLVAIGL 240

Query: 231 VADVVPLDDNNRILVHQGLQRIR-------AGLARPGIQALIEVAKRDARRLVAADFGFA 283
           +AD+V L  + R L  +GLQ+++           RPGI  L+   +    R    D  F 
Sbjct: 241 IADLVDLRGDCRYLAQRGLQQLQQLAQVRPQASRRPGITELLNRCRGSGDR--PTDIRFG 298

Query: 284 LGPRINAAGRLDDMS-FGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCE 342
           LGPR+NA  RL   +   ++LL   +  AARR+A +++ LNQ R+ ++  + +E      
Sbjct: 299 LGPRLNAVSRLQGKADLALQLLTSRDPTAARRLAQQVEELNQRRQRLQRDLLRELE---P 355

Query: 343 RLQLSDDRELPYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFA----EGGDGKLKGSC 398
           ++Q   DR     LVL    WH G++G++AS++  +  +P +  +    +      +GS 
Sbjct: 356 QIQQQRDRA---ALVLVGEGWHGGLLGLVASQVAHREDKPTLVLSLDPPKTQPRLARGSA 412

Query: 399 RSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVRE 453
           RS+ GL++ + L         ++L+FGGH  AAGLT+ +++        +Q +++
Sbjct: 413 RSITGLNLYELL----ANQRSLLLRFGGHPQAAGLTLIDEHLPLLREALEQRLQQ 463