Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., single-stranded-DNA-specific exonuclease from Sinorhizobium meliloti 1021

 Score =  263 bits (673), Expect = 1e-74
 Identities = 193/565 (34%), Positives = 288/565 (50%), Gaps = 32/565 (5%)

Query: 22  LLRRLYLSRGVS---NVAQLEKAAKALHSFKQ-LHGIDRAVELLFAAIAEQKRIIVVGDF 77
           L+ R+   RGV      A LE   +AL      L    +A E L  AI  ++++++ GD+
Sbjct: 48  LIARVLAGRGVGLDDAAAFLEPTLRALMPDPDTLTDGRKAAERLADAIRRREKVVIFGDY 107

Query: 78  DADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGV 137
           D DGA SSAL    LR       +  +P+R  +GYG +P+ +DQ I+RG+E+I+TVD G 
Sbjct: 108 DVDGAASSALMARFLRHFDI-TAEIYIPDRIFEGYGPNPQAIDQLIDRGSELIVTVDCGS 166

Query: 138 SSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMM 197
           +S E +  A ++   VVV DHH  G  LP   A+VNPN +        L   GV + +++
Sbjct: 167 TSHEALAVAAERRTDVVVIDHHQVGSVLPPCHALVNPNREDDLSGQGHLCAAGVVYLVLV 226

Query: 198 ALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRAGLA 257
                +R +G   A       L+ L+DLVAL TV DVVPL   NR  V +GL   R  + 
Sbjct: 227 NTLRVLRLRGDPRAASF---DLLSLLDLVALATVCDVVPLKGLNRAYVVKGLLAAR-HMG 282

Query: 258 RPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARRMAS 317
             G+ AL+  A      +     GF LGPRINA GR+ D + G  LL  +   AA  +AS
Sbjct: 283 NAGLAALLRKAAIGG-PVTPYHLGFLLGPRINAGGRIGDAALGSRLLTLDVAAAAEAIAS 341

Query: 318 ELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASRIKE 377
           +LD LN+ R+ +E  M  EA A  E L      E    +V  +++WH G++G++A+RIKE
Sbjct: 342 QLDELNRDRQAMEAAMLAEAEA--EVLAEYGTGEGASVIVTARQNWHPGIVGLIAARIKE 399

Query: 378 KYHRPVIAFAEGGDGKLKGSCRSVPGLHM----RDALDKIDTQNPGIILKFGGHAMAAGL 433
           K+ RP  A A   +G+  GS RS+ G  M    R A+D       G+++K GGHAMAAGL
Sbjct: 400 KFRRPAFAIAFDPNGRGTGSGRSINGFDMGRLVRAAVDN------GLLVKGGGHAMAAGL 453

Query: 434 TIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAF 493
           T+E     +  + F++     + +      +  DG L     +L   +LL   GP+G   
Sbjct: 454 TVERGKLGQLRQFFEERAETAIRDLVAVQTLKVDGALAAAGATLDLVDLLDQAGPYGSGH 513

Query: 494 PEPLFD-GEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDASV--- 549
           P+PLF   + ++   + VG  H+K+ LE           ++GIAF        D  +   
Sbjct: 514 PQPLFAFPQHRLRDSRQVGANHVKVTLEG-----QDGSRMEGIAFRAAETPLGDFLLGNR 568

Query: 550 -KTVRLAYKLDINEFRGNQSLQLMI 573
             TV +A  +  + ++G + +QL +
Sbjct: 569 GATVHVAGSVSADLWQGTRKVQLRV 593