Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella amazonensis SB2B

 Score =  678 bits (1750), Expect = 0.0
 Identities = 344/577 (59%), Positives = 443/577 (76%), Gaps = 6/577 (1%)

Query: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62
           ++ RR   D S LP+H+ PL+++L   RGV+     ++ ++ L     L G+DRA  LL 
Sbjct: 4   KLTRRETVDDSHLPNHLHPLIKQLLARRGVAGDDCEQELSRLLRPETML-GLDRAACLLA 62

Query: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122
            A    KR+++VGDFDADGATS+++ +LAL+MLG    D+L+PNRF+ GYGLS  +V  A
Sbjct: 63  DAAMASKRMLIVGDFDADGATSTSVCLLALKMLGIHGADFLIPNRFDYGYGLSVPLVALA 122

Query: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182
           +E+GAE+++TVDNG+SS+EGV  AK  G+QVV+TDHHLPGQ LP+ DA+VNPN Q C F 
Sbjct: 123 VEKGAEVLITVDNGISSIEGVAAAKAAGMQVVITDHHLPGQVLPDADAIVNPNQQGCTFA 182

Query: 183 SKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNR 242
           SK++AGVGVAFYLM+AL   +R++GWF   G+ EP L  L+D+VALGTVADVV LD NNR
Sbjct: 183 SKSIAGVGVAFYLMLALRAELRRRGWFEKLGIKEPNLAVLVDIVALGTVADVVSLDANNR 242

Query: 243 ILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVE 302
           ILV  GL+R+RAG  RPGI AL+EVAKR+  R VAADFGFA+GPR+NAAGRLD+MS GVE
Sbjct: 243 ILVDAGLKRVRAGRCRPGITALLEVAKRNPARAVAADFGFAVGPRLNAAGRLDEMSLGVE 302

Query: 303 LLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRD 362
            LLC++I  ARRMA+ELDGLNQ R+E+E GM+ EA+   ERLQL ++ +LP+G+ L+Q D
Sbjct: 303 TLLCDDIMYARRMAAELDGLNQERRELETGMQAEALKSLERLQL-EESQLPWGIALYQDD 361

Query: 363 WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIIL 422
           WHQGVIGILASRIK+KYHRPVIAFAE  D ++KGS RS+ GLHMRD L+ I +++PG+I 
Sbjct: 362 WHQGVIGILASRIKDKYHRPVIAFAEASDNEVKGSARSIKGLHMRDLLELISSRHPGLIP 421

Query: 423 KFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAEL 482
           KFGGHAMAAGL++ + +  +F  +FD  VRE L    L G ILSDGEL  E  +L TA L
Sbjct: 422 KFGGHAMAAGLSLAKADVSKFQTVFDDTVRELLSPELLTGEILSDGELPIEYLTLETANL 481

Query: 483 LRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLR 542
           +RA GPWGQ F EPLFDG F++L Q+LVGEKHLK+M+E         +M+D IAFNVDL+
Sbjct: 482 IRASGPWGQGFEEPLFDGHFRLLQQRLVGEKHLKMMVETEC----GRLMLDAIAFNVDLK 537

Query: 543 RWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK 579
            WPDA+V+ V LAY+LD+NEFRGNQSLQL+++ ++AK
Sbjct: 538 LWPDATVRHVHLAYRLDVNEFRGNQSLQLLVEQIDAK 574