Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., RecJ exonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score =  285 bits (729), Expect = 4e-81
 Identities = 192/527 (36%), Positives = 284/527 (53%), Gaps = 22/527 (4%)

Query: 54  IDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYG 113
           +D+AV  L  A+ +++ I + GD+D DGATS+AL     R LG+R + + +P+R  +GYG
Sbjct: 90  MDKAVARLSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLGARVLIH-IPDRVLEGYG 148

Query: 114 LSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVN 173
            +   ++    +GA +++TVD G+S+ + +R AK  GL VVV DHH    ELP   A+VN
Sbjct: 149 PNAPALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHHEARTELPAAVAVVN 208

Query: 174 PNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVAD 233
           P     A P   LA VGVAF + +A+   +R  GWFAA+    P LM L+DLVALGTV D
Sbjct: 209 PKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDLMALLDLVALGTVCD 268

Query: 234 VVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVA-KRDARRLVAADFGFALGPRINAAG 292
           +VPL   NR LV QGL ++ A    PGI AL EV+  RD  R+ A   GF LGPR+NA G
Sbjct: 269 MVPLIGVNRALVQQGL-KVIAKRTNPGIAALAEVSGVRD--RVDAFHLGFMLGPRVNAGG 325

Query: 293 RLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDREL 352
           R+     G  LL   +       A +LD  N  RKEIE  +  +A+   E+++ +   +L
Sbjct: 326 RVGQAGMGAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAI---EQVEAAPANDL 382

Query: 353 PYGLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDK 412
           P  +     DWH GV+GI+ASR+KE+Y  P  A A  G G  KGS RSV G+ +   +  
Sbjct: 383 PL-VFASGTDWHPGVVGIVASRLKERYGLPACAVALDG-GLAKGSGRSVGGVDLGRVV-- 438

Query: 413 IDTQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKP 472
           I  +  G++   GGHAMAAG ++     E F +   + +++++   AL   +  DG L  
Sbjct: 439 IAAREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLDLDGVLDV 498

Query: 473 EEFSLHTAELLRAGGPWGQAFPEPLFD-GEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVM 531
              +      L   GP+G   PEP F     +V    +VG  H++  L       P+   
Sbjct: 499 RGANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNG-----PSGGS 553

Query: 532 IDGIAFNVDLRRWPDASV----KTVRLAYKLDINEFRGNQSLQLMID 574
           +  +AF         A +     ++ +A  L ++ F+G +++ L++D
Sbjct: 554 LKAMAFKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVD 600